Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs143291340 chr4:76315586 G/A 7.29E-5 116 38.83 47.07 60.13 KM Plot
THYM rs143295846 chr6:117121427 T/TCCTC 5.68E-5 115 19.03 50.97 38.83 KM Plot
THYM rs143357 chr6:117173577 C/T 4.73E-5 118 38.33 50.28 19.03 KM Plot
THYM rs143466468 chr2:30787526 T/TA 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs143493786 chr4:70085697 T/A 5.73E-13 118 39.75 49.6 6 KM Plot
THYM rs143537339 chr6:151424378 TAA/T 0 119 38.13 55.1 4.13 KM Plot
THYM rs143581894 chr15:25851680 T/C 0.000139 118 41.22 25.83 28.43 KM Plot
THYM rs143703809 chr4:70104230 T/C 4.7E-13 119 41.77 35 6 KM Plot
THYM rs143708310 chr4:70295630 C/G 6.15E-13 118 41.77 42.3 6 KM Plot
THYM rs143720874 chr4:76306223 G/A 0.000191 116 38.33 41.78 60.13 KM Plot
THYM rs143782423 chr6:72873986 G/A 0.000147 118 38.23 50.12 17.77 KM Plot
THYM rs143796084 chr4:70051723 T/A 7.82E-13 117 39.75 42.3 6 KM Plot
THYM rs143829240 chr9:97180677 T/C 8.1E-5 119 41.77 42 17.03 KM Plot
THYM rs143936307 chr4:70102060 C/T 4.7E-13 119 41.77 35 6 KM Plot
THYM rs143970222 chr15:74004490 C/T 0.000122 117 49.5 36.4 28.43 KM Plot